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1

Characterizing key features in the formation of ice and gas hydrate systems

Liang, Shuai, Hall, Kyle Wm., Laaksonen, Aatto, Zhang, Zhengcai, Kusalik, Peter G.

Journal:

Philosophical Transactions Mathematical Physical & Engineering Sciences

Year:

2019

Language:

english

File:

PDF, 3.12 MB

english, 2019

2

Transcriptome analysis of response to Plasmodiophora brassicae infection in the Arabidopsis shoot and root

Irani, Solmaz, Trost, Brett, Waldner, Matthew, Nayidu, Naghabushana, Tu, Jiangying, Kusalik, Anthony J., Todd, Christopher D., Wei, Yangdou, Bonham-Smith, Peta C.

Journal:

Year:

2018

Language:

english

File:

PDF, 4.23 MB

english, 2018

3

Orthogonal polynomials and fluctuations of random matrices

Kusalik, Timothy, Mingo, James A, Speicher, Roland

Journal:

Journal für die reine und angewandte Mathematik (Crelles Journal)

Year:

2007

Language:

english

File:

PDF, 471 KB

english, 2007

4

The Spatial Structure in Liquid Water

Kusalik, P. G., Svishchev, I. M.

Journal:

Year:

1994

Language:

english

File:

PDF, 512 KB

english, 1994

5

On the molecular theory of aqueous electrolyte solutions. I. The solution of the RHNC approximation for models at finite concentration

Kusalik, P. G., Patey, G. N.

Journal:

The Journal of Chemical Physics

Year:

1988

Language:

english

File:

PDF, 2.04 MB

english, 1988

6

Quartzlike polymorph of ice

Svishchev, Igor M., Kusalik, Peter G.

Journal:

Physical Review B

Year:

1996

Language:

english

File:

PDF, 81 KB

english, 1996

7

Crystallization of Liquid Water in a Molecular Dynamics Simulation

Svishchev, Igor M., Kusalik, Pater G.

Journal:

Physical Review Letters

Year:

1994

Language:

english

File:

PDF, 389 KB

english, 1994

8

Systems Kinomics Demonstrates Congo Basin Monkeypox Virus Infection Selectively Modulates Host Cell Signaling Responses as Compared to West African Monkeypox Virus

Kindrachuk, J., Arsenault, R., Kusalik, A., Kindrachuk, K. N., Trost, B., Napper, S., Jahrling, P. B., Blaney, J. E.

Journal:

Molecular & Cellular Proteomics

Year:

2012

Language:

english

File:

PDF, 1.44 MB

english, 2012

9

Identification of developmentally-specific kinotypes and mechanisms of Varroa mite resistance through whole-organism, kinome analysis of honeybee

Robertson, Albert J., Trost, Brett, Scruten, Erin, Robertson, Thomas, Mostajeran, Mohammad, Connor, Wayne, Kusalik, Anthony, Griebel, Philip, Napper, Scott

Journal:

Frontiers in Genetics

Year:

2014

Language:

english

File:

PDF, 2.29 MB

english, 2014

10

Nuclear Quantum Effects in Water and Aqueous Systems: Experiment, Theory, and Current Challenges

Ceriotti, Michele, Fang, Wei, Kusalik, Peter G., McKenzie, Ross H., Michaelides, Angelos, Morales, Miguel A., Markland, Thomas E.

Journal:

Chemical Reviews

Year:

2016

Language:

english

File:

PDF, 3.04 MB

english, 2016

11

OPTIMALLY-CONNECTED HIDDEN MARKOV MODELS FOR PREDICTING MHC-BINDING PEPTIDES

ZHANG, CHENHONG, BICKIS, MIKELIS G., WU, FANG-XIANG, KUSALIK, ANTHONY J.

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2006

Language:

english

File:

PDF, 465 KB

english, 2006

12

Formalizing Emphasis in Information Visualization

Hall, K. Wm., Perin, C., Kusalik, P. G., Gutwin, C., Carpendale, S.

Journal:

Computer Graphics Forum

Year:

2016

Language:

english

File:

PDF, 2.38 MB

english, 2016

13

Induction time of hydrate formation in water-in-oil emulsions

Zheng, Haimin, Huang, Qiyu, Wang, Wei, Long, Zhen, Kusalik, Peter G.

Journal:

Industrial & Engineering Chemistry Research

Year:

2017

Language:

english

File:

PDF, 1.03 MB

english, 2017

14

Clinical and associated inflammatory biomarker features predictive of short-term outcomes in non-systemic juvenile idiopathic arthritis

Rezaei, Elham, Hogan, Daniel, Trost, Brett, Kusalik, Anthony J, Boire, Gilles, Cabral, David A, Campillo, Sarah, Chédeville, Gaëlle, Chetaille, Anne-Laure, Dancey, Paul, Duffy, Ciaran, Watanabe Duffy,

Journal:

Year:

2020

File:

PDF, 327 KB

2020

15

Massive generation of metastable bulk nanobubbles in water by external electric fields

Ghaani, Mohammad Reza, Kusalik, Peter G., English, Niall J.

Journal:

Science Advances

Year:

2020

File:

PDF, 744 KB

2020

16

Machine Vision Grading of Pistachio Nuts Using Fourier Descriptors

A. Ghazanfari, J. Irudayaraj, A. Kusalik, M. Romaniuk

Journal:

Journal of Agricultural Engineering Research

Year:

1997

Language:

english

File:

PDF, 279 KB

english, 1997

17

On the dielectric constant of liquid ammonia

J.S. Perkyns, P.G. Kusalik, G.N. Patey

Journal:

Chemical Physics Letters

Year:

1986

Language:

english

File:

PDF, 371 KB

english, 1986

18

Roto-translational motion in liquid water and its structural implication

I.M. Svishchev, P.G. Kusalik

Journal:

Chemical Physics Letters

Year:

1993

Language:

english

File:

PDF, 609 KB

english, 1993

19

Spatial structure in low-temperature amorphous phases of water

I.M. Svishchev, P.G. Kusalik

Journal:

Chemical Physics Letters

Year:

1995

Language:

english

File:

PDF, 317 KB

english, 1995

20

Secondary storage in a concurrent logic programming environment

Anthony J. Kusalik

Journal:

Journal of Systems and Software

Year:

1990

Language:

english

File:

PDF, 1.64 MB

english, 1990

21

Dynamical properties of Coulombic systems at low densities: computer simulation results

I.M. Svishchev, P.G. Kusalik

Journal:

Physica A: Statistical Mechanics and its Applications

Year:

1993

Language:

english

File:

PDF, 1001 KB

english, 1993

22

Explorations of gas hydrate crystal growth by molecular simulations

Shuai Liang, Peter G. Kusalik

Journal:

Chemical Physics Letters

Year:

2010

Language:

english

File:

PDF, 3.09 MB

english, 2010

23

Solvation structures in three dimensions

Igor M. Svishchev, Alexander Yu. Zassetsky, Peter G. Kusalik

Journal:

Chemical Physics

Year:

2000

Language:

english

File:

PDF, 526 KB

english, 2000

24

Preface: Volume 30, Issue 4

Mireille Ducassé, Anthony Kusalik, German Puebla

Journal:

Electronic Notes in Theoretical Computer Science

Year:

2000

Language:

english

File:

PDF, 31 KB

english, 2000

25

Strength in numbers: achieving greater accuracy in MHC-I binding prediction by combining the results from multiple prediction tools

Brett Trost, Mik Bickis, Anthony Kusalik

Journal:

Immunome Research

Year:

2007

Language:

english

File:

PDF, 278 KB

english, 2007

26

BoLA class I allele diversity and polymorphism in a herd of cattle

Shawn Babiuk, Benjamin Horseman, Chenhong Zhang, Mik Bickis, Anthony Kusalik, Lawrence B. Schook, Mitchell S. Abrahamsen, Reno Pontarollo

Journal:

Year:

2007

Language:

english

File:

PDF, 282 KB

english, 2007

27

Sequence uniqueness and sequence variability as modulating factors of human anti-HCV humoral immune response

Darja Kanduc, Luciana Tessitore, Guglielmo Lucchese, Anthony Kusalik, Emanuel Farber, Francesco M. Marincola

Journal:

Cancer Immunology, Immunotherapy

Year:

2008

Language:

english

File:

PDF, 446 KB

english, 2008

28

Peptidology: short amino acid modules in cell biology and immunology

G. Lucchese, A. Stufano, B. Trost, A. Kusalik, D. Kanduc

Journal:

Year:

2007

Language:

english

File:

PDF, 264 KB

english, 2007

29

Sub-epitopic dissection of HCV E1315–328HRMAWDMMMNWSPT sequence by similarity analysis

L. Polimeno, A. Mittelman, L. Gennero, A. Ponzetto, G. Lucchese, A. Stufano, A. Kusalik, D. Kanduc

Journal:

Year:

2008

Language:

english

File:

PDF, 133 KB

english, 2008

30

Mapping the human proteome for non-redundant peptide islands

G. Capone, A. De Marinis, S. Simone, A. Kusalik, D. Kanduc

Journal:

Year:

2008

Language:

english

File:

PDF, 106 KB

english, 2008

31

Icola — Incremental Constraint-Based Graphics for Visualization

Gregory M. Oster, Anthony J. Kusalik

Journal:

Year:

1998

Language:

english

File:

PDF, 366 KB

english, 1998

32

Applications of Integral Equation Calculations to High-Temperature Solvation Phenomena

A.A. Chialvo, P.G. Kusalik, Yu.V. Kalyuzhnyi, P.T. Cummings

Journal:

Journal of Statistical Physics

Year:

2000

Language:

english

File:

PDF, 509 KB

english, 2000

33

DYNAMIC MODEL-BASED CLUSTERING FOR TIME–COURSE GENE EXPRESSION DATA

WU, FANG-XIANG, ZHANG, W. J., KUSALIK, ANTHONY J.

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2005

Language:

english

File:

PDF, 342 KB

english, 2005

34

Serialization of process reduction in Concurrent Prolog

Anthony J. Kusalik

Journal:

New Generation Computing

Year:

1984

Language:

english

File:

PDF, 452 KB

english, 1984

35

Bounded-wait merge in Shapiro’s Concurrent Prolog

Anthony J. Kusalik

Journal:

New Generation Computing

Year:

1984

Language:

english

File:

PDF, 534 KB

english, 1984

36

Specification and initialization of a logic computer system

Anthony J. Kusalik

Journal:

New Generation Computing

Year:

1986

Language:

english

File:

PDF, 1.13 MB

english, 1986

37

Structural evolution during water crystallization: Insights from ring analysis

Payman Pirzadeh, Eric N. Beaudoin, Peter G. Kusalik

Journal:

Chemical Physics Letters

Year:

2011

Language:

english

File:

PDF, 1.78 MB

english, 2011

38

The oligodeoxynucleotide sequences corresponding to never-expressed peptide motifs are mainly located in the non-coding strand

Giovanni Capone, Giuseppe Novello, Candida Fasano, Brett Trost, Mik Bickis, Anthony Kusalik, Darja Kanduc

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 2.86 MB

english, 2010

39

Determination of the minimum number of microarray experiments for discovery of gene expression patterns

Fang-Xiang Wu, WJ Zhang, Anthony J Kusalik

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 270 KB

english, 2006

40

Analysis and comparison of the pan-genomic properties of sixteen well-characterized bacterial genera

Brett Trost, Monique Haakensen, Vanessa Pittet, Barry Ziola, Anthony Kusalik

Journal:

BMC Microbiology

Year:

2010

Language:

english

File:

PDF, 1.06 MB

english, 2010

41

Widespread and ample peptide overlapping between HCV and Homo sapiens proteomes

Anthony Kusalik, Miķelis Bickis, Christopher Lewis, Ying Li, Guglielmo Lucchese, Francesco M. Marincola, Darja Kanduc

Journal:

Year:

2007

Language:

english

File:

PDF, 264 KB

english, 2007

42

Massive peptide sharing between viral and human proteomes

Darja Kanduc, Angela Stufano, Guglielmo Lucchese, Anthony Kusalik

Journal:

Year:

2008

Language:

english

File:

PDF, 604 KB

english, 2008

43

Codon number shapes peptide redundancy in the universal proteome composition

Anthony Kusalik, Brett Trost, Mik Bickis, Candida Fasano, Giovanni Capone, Darja Kanduc

Journal:

Year:

2009

Language:

english

File:

PDF, 212 KB

english, 2009

44

Computational phosphorylation site prediction in plants using random forests and organism-specific instance weights

Trost, B., Kusalik, A.

Journal:

Year:

2013

Language:

english

File:

PDF, 333 KB

english, 2013

45

Area-efficient VLSI layouts for binary hypercubes

Patel, A., Kusalik, A., McCrosky, C.

Journal:

IEEE Transactions on Computers

Year:

2000

Language:

english

File:

PDF, 979 KB

english, 2000

46

Structure in liquid water: A study of spatial distribution functions

Svishchev, I. M., Kusalik, P. G.

Journal:

The Journal of Chemical Physics

Year:

1993

Language:

english

File:

PDF, 1.11 MB

english, 1993

47

Nucleation of Gas Hydrates within Constant Energy Systems

Liang, Shuai, Kusalik, Peter G.

Journal:

Journal of Physical Chemistry B

Year:

2013

Language:

english

File:

PDF, 4.76 MB

english, 2013

48

Observation of two-step nucleation in methane hydrates

Vatamanu, Jenel, Kusalik, Peter G.

Journal:

Physical Chemistry Chemical Physics

Year:

2010

Language:

english

File:

PDF, 2.22 MB

english, 2010

49

Rare peptide segments are found significantly more often in proto-oncoproteins than control proteins: implications for immunology and oncology

Trost, B., Kanduc, D., Kusalik, A.

Journal:

Journal of The Royal Society Interface

Year:

2009

Language:

english

File:

PDF, 213 KB

english, 2009

50

Three-Dimensional Structure in Water−Methanol Mixtures

Laaksonen, A., Kusalik, P. G., Svishchev, I. M.

Journal:

Journal of Physical Chemistry A

Year:

1997

Language:

english

File:

PDF, 314 KB

english, 1997